SBML Level 3: an extensible format for the exchange and reuse of biological models

SM Keating, D Waltemath, M König, F Zhang… - Molecular systems …, 2020 - embopress.org
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models …

The driver and passenger effects of isocitrate dehydrogenase 1 and 2 mutations in oncogenesis and survival prolongation

RJ Molenaar, T Radivoyevitch, JP Maciejewski… - … et Biophysica Acta (BBA …, 2014 - Elsevier
Mutations in isocitrate dehydrogenase 1 and 2 (IDH1 and IDH2) are key events in the
development of glioma, acute myeloid leukemia (AML), chondrosarcoma, intrahepatic …

Dynamics of clonal evolution in myelodysplastic syndromes

H Makishima, T Yoshizato, K Yoshida, MA Sekeres… - Nature …, 2017 - nature.com
To elucidate differential roles of mutations in myelodysplastic syndromes (MDS), we
investigated clonal dynamics using whole-exome and/or targeted sequencing of 699 …

12 Gy gamma knife radiosurgical volume is a predictor for radiation necrosis in non-AVM intracranial tumors

T Korytko, T Radivoyevitch, V Colussi… - International Journal of …, 2006 - Elsevier
Purpose: To determine whether the 12-Gy radiosurgical volume (12-GyV) correlates with the
development of postradiosurgical imaging changes suggestive of radiation necrosis in …

Genetic alterations of the cohesin complex genes in myeloid malignancies

S Thota, AD Viny, H Makishima… - Blood, The Journal …, 2014 - ashpublications.org
Somatic cohesin mutations have been reported in myelodysplastic syndrome (MDS) and
acute myeloid leukemia (AML). To account for the morphologic and cytogenetic diversity of …

[HTML][HTML] Global immune fingerprinting in glioblastoma patient peripheral blood reveals immune-suppression signatures associated with prognosis

TJ Alban, AG Alvarado, MD Sorensen, D Bayik… - JCI insight, 2018 - ncbi.nlm.nih.gov
Glioblastoma (GBM) remains uniformly lethal, and despite a large accumulation of immune
cells in the microenvironment, there is limited antitumor immune response. To overcome …

Radioprotection of IDH1-Mutated Cancer Cells by the IDH1-Mutant Inhibitor AGI-5198

RJ Molenaar, D Botman, MA Smits, VV Hira… - Cancer research, 2015 - AACR
Abstract Isocitrate dehydrogenase 1 (IDH1) is mutated in various types of human cancer to
IDH1R132H, a structural alteration that leads to catalysis of α-ketoglutarate to the …

p53-Independent, normal stem cell sparing epigenetic differentiation therapy for myeloid and other malignancies

Y Saunthararajah, P Triozzi, B Rini, A Singh… - Seminars in …, 2012 - Elsevier
Cytotoxic chemotherapy for acute myeloid leukemia (AML) usually produces only temporary
remissions, at the cost of significant toxicity and risk for death. One fundamental reason for …

[HTML][HTML] Oral tetrahydrouridine and decitabine for non-cytotoxic epigenetic gene regulation in sickle cell disease: a randomized phase 1 study

R Molokie, D Lavelle, M Gowhari, M Pacini… - PLoS …, 2017 - journals.plos.org
Background Sickle cell disease (SCD), a congenital hemolytic anemia that exacts terrible
global morbidity and mortality, is driven by polymerization of mutated sickle hemoglobin …

[HTML][HTML] Risk of hematologic malignancies after radioiodine treatment of well-differentiated thyroid cancer

RJ Molenaar, S Sidana, T Radivoyevitch… - Journal of clinical …, 2018 - ncbi.nlm.nih.gov
Purpose To investigate the risk and outcomes of second hematologic malignancies (SHMs)
in a population-based cohort of patients with well-differentiated thyroid cancer (WDTC) …