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#383 BioEndoCar: identifying candidate biomarkers for diagnosis and prognosis of endometrial carcinoma using machine learning and artificial intelligence
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  1. Marko Kokol1,
  2. Andrea Romano2,
  3. Erica Werner3,
  4. Špela Smrkolj4,
  5. Luka Roškar5,
  6. Boštjan Pirš4,
  7. Andrzej Semczuk6,
  8. Aleksandra Kaminska6,
  9. Aneta Adamiak-Godlewska6,
  10. Dmytro Fishman7,
  11. Jaak Vilo7,
  12. Camille Lowy8,
  13. Anne Griesbeck8,
  14. Christoph Schroeder8,
  15. Janina Tokarz9,
  16. Jerzy Adamski9,
  17. Vit Weinberger10,
  18. Markéta Bednaríková10,
  19. Petra Vinklerova10,
  20. Simone Ferrero11,
  21. Fabio Barra11,
  22. Iztok Takac12,
  23. Monika Sobocan12,
  24. Jure Knez12 and
  25. Tea Lanišnik Rižner13
  1. 1Semantika Research, Semantika d.o.o., Maribor, Slovenia
  2. 2Maastricht University, Maastricht, The Netherlands
  3. 3Maastricht University Medical Centre, Maastricht, The Netherlands
  4. 4University Medical Centre Ljubljana, Ljubljana, Slovenia
  5. 5Faculty of Medicine, University of Ljubljana,, Ljubljana, Slovenia
  6. 6Lublin Medical University, Lublin, Poland
  7. 7University of Tartu, Tartu, Estonia
  8. 8Sciomics, Heidelberg, Germany
  9. 9Helmholtz Zentrum München, Munich, Germany
  10. 10University Hospital Brno, Brno, Czech Republic
  11. 11IRCCS Ospedale Policlinico San Martino, Genoa, Italy
  12. 12University Medical Centre Maribor, Maribor, Slovenia
  13. 13Medical Faculty, University of Ljubljana, Ljubljana, Slovenia

Abstract

Introduction/Background Endometrial carcinoma (EC) is the most common gynaecological malignancy in the developed world. Currently, no valid non-invasive diagnostic or prognostic methods exist, making diagnosis and treatment rely on histopathological and surgical findings. The clinical study ’Biomarkers for Diagnosis and Prognosis of Endometrial Carcinoma’ (BioEndoCar; NCT03553589) addresses this issue.

Methodology A prospective observational case-control study was conducted at six medical centres across Europe. Plasma samples from women with diagnosed EC and controls were examined using non-targeted/targeted metabolomic and semi-quantitative immune-based proteomic approaches. The blood metabolomics (>850 metabolites) and proteomics (>900 proteins) data together with clinical and epidemiological data, were analysed using advanced artificial intelligence (AI) and machine learning (ML) methods to develop new diagnostic/prognostic models for early EC diagnosis and identifying patients with low/high risk for cancer progression and recurrence.

Results BioEndoCar has recruited over 440 patients, with strict standard operating procedures for sample collection, processing, and storage. The diagnostic/prognostic models based on all data developed using AI/ML methods showed promising characteristics with a repeated k-fold cross-validation AUC > 0.8. The developed models will undergo further validation using both statistical (AI/ML) approaches to confirm which subset of proteomic and metabolomic data could serve as diagnostic and prognostic biomarkers in endometrial cancer.

Conclusion The BioEndoCar study has completed the initial phase of identifying and validating diagnostic/prognostic models for early EC diagnosis and identifying patients with low/high risk for cancer progression and recurrence using artificial intelligence and machine learning methods. If validated, the models including a subset of proteomic and metabolomic data could serve as a foundation for developing valuable non-invasive tools for the diagnosis and prognosis of EC.

Disclosures The BioEndoCar consortium was a EU-H2020 funded Transcan2 ERA-Net project (2018–2021), with involvement of the national funding agencies: Ministry of Education, Science and Sports Slovenia; Dutch Cancer Society, The Netherlands; Federal Ministry for Education and Research, Germany; Estonian Research Council, Estonia and National Centre for Research and Development, Poland.

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